PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02476.10
Common NameJCGZ_20671, LOC105645884
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 230aa    MW: 26282.1 Da    PI: 5.4539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02476.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-1759109155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +   ++Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++++g
  Jcr4S02476.10  59 PVYRGVRKRN-GNKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALAFRG 109
                    68*****887.9*********8...347************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1359109IPR001471AP2/ERF domain
SMARTSM003801.3E-2760123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3060119IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2160119IPR016177DNA-binding domain
PROSITE profilePS5103221.95760117IPR001471AP2/ERF domain
PRINTSPR003679.9E-86172IPR001471AP2/ERF domain
CDDcd000187.47E-2861119No hitNo description
PRINTSPR003679.9E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSCQSSDNNT QESSSSLSDS CSSTTNKTRE AHSDEEVLLA TSLPKRKAGR RVFKETRHPV  60
YRGVRKRNGN KWVCELREPN KKTRIWLGTY PTPEMAARAH DVAALAFRGK SACLNFADSA  120
WRLPVPASRD AKEIRRAASQ AAEMFRREES DDVQITRRDD SFVDSTDSEC KNYEENLWFV  180
EEDTIFDMPR LLVDMAQGLL LSPPRFEGEF SNDHWNPLDS SDSDMSLWSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087007.11e-171PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9M0L06e-65DRE1A_ARATH; Dehydration-responsive element-binding protein 1A
TrEMBLA0A067JZT21e-171A0A067JZT2_JATCU; Uncharacterized protein
STRINGPOPTR_0001s08710.18e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.18e-63C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]